NuFold RNA Structure Database

An open access web server providing 545,319 RNA structure predictions by NuFold.

Developed by Kihara Lab

Examples:

Featured: Homo sapiens / Hepatitis delta virus HDV ribozyme

What is the NuFold Database?

This database provides a comprehensive collection of RNA 3D structures predicted by NuFold, a deep learning-based model. It offers detailed structural information, including pLDDT confidence scores and secondary structure analysis, to aid researchers in understanding RNA function and biology.

Features

Example NuFold record

A typical results page.

Filter Search

Find RNA entries via URS ID, Rfam Family, Sequence Length, MSA Depth, etc.

Structure Information

Locate taxonomy/family and NuFold input information.

3D Viewer

See predicted tertiary RNA structures in 3D, powered by Mol*.

Confidence Metrics

Assess the structure confidence using pLDDT and F1 scoring.

In-Model Analysis

Use coloring options to gauge secondary/tertiary structural success visually.

Where to Go Next?

New to NuFold?

Our Tutorial will guide you through navigating the database's search features as well as how to call the API. Also, check out our FAQ!

Need Bulk Data?

Visit the Downloads page to access complete datasets, including PDB files and structural statistics.

Curious About Our Data?

Explore the About and Statistics pages for an overview of the database's scope and contents.